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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35487058_35488429_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35487058 - 35488429
Intron Length:
1372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTATTATT
5'SS Class:
major
3'SS Sequence:
CTGTCTTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TGCTCATTAACG
Flanking Amino Acid:
LLKEREEKKKIEEEKKRKKE
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.2
84.9
32
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
76.3
0.59
0.8
72
32.7
Minor 5ss
38.1
-1.3
2.8
52.4
44
Minor BPS
67
0.4
1.7
69.56
43.3

Associated Gene:

Gene:
CARS1
Ensembl Gene ID:
ENSAPLG00000015062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015778
35466911 - 35491015
24105