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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35488490_35489749_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35488490 - 35489749
Intron Length:
1260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
CATGCTTTATAT
Flanking Amino Acid:
EAARKKQEQEAAKLAKMKIP
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
83.3
0.75
0.8
77
35.6
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
49.3
0.03
1.8
65.82
44.9

Associated Gene:

Gene:
CARS1
Ensembl Gene ID:
ENSAPLG00000015062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015778
35466911 - 35491015
24105