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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35489834_35490880_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35489834 - 35490880
Intron Length:
1047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAGAC
5'SS Class:
major
3'SS Sequence:
TTTTATATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATCTTAAAT
Flanking Amino Acid:
RDKYSIFDENGFPTHDAEGK
Intron Amino Acid Position:
692

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
71.5
32
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.1
0.86
0.8
86
32.8
Minor 5ss
33.2
-1.9
3.5
46.2
42.5
Minor BPS
76.1
0.9
1.3
89.95
33.5

Associated Gene:

Gene:
CARS1
Ensembl Gene ID:
ENSAPLG00000015062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015778
35466911 - 35491015
24105