Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35503786_35505347_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

35503786 - 35505347

Intron Length:

1562

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTACA

5'SS Class:

major

3'SS Sequence:

ATTTATTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TATTTCTTAATT

Flanking Amino Acid:

SENEEEEKLAGDLKNAVVIE

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

1.1

36.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

82.2

0.72

0.8

76.6

36.6

Minor 5ss

38.9

-1.2

2.7

53.8

42.8

Minor BPS

85.1

1.18

0.9

92.77

28.9

Associated Gene:

Gene:

NAP1L4

Ensembl Gene ID:

ENSAPLG00000014701

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015349

35498829 - 35520539

21711

ENSAPLT00000032862

35498829 - 35514589

15761