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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35506847_35510373_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35506847 - 35510373
Intron Length:
3527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AACTTTCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTAACATAAAAC
Flanking Amino Acid:
VKFSEPGQPMSFSLEFHFGP
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
74.9
0.56
0.9
66.6
39.7
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
47.6
-0.2
2
62.98
41.6

Associated Gene:

Gene:
NAP1L4
Ensembl Gene ID:
ENSAPLG00000014701
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032862
35498829 - 35514589
15761
ENSAPLT00000015349
35498829 - 35520539
21711