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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35512211_35513757_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35512211 - 35513757
Intron Length:
1547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTACTTGAATG
Flanking Amino Acid:
SFFNFFNPIKVSGDGESLDE
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
69.7
43.7
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
94.9
1.01
0.5
91.6
19.6
Minor 5ss
47
-0.3
2.8
56.3
47.9
Minor BPS
63.2
0.28
1.5
68.96
38.7

Associated Gene:

Gene:
NAP1L4
Ensembl Gene ID:
ENSAPLG00000014701
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015349
35498829 - 35520539
21711
ENSAPLT00000032862
35498829 - 35514589
15761