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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35513781_35514394_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35513781 - 35514394
Intron Length:
614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTATTTCAAACT
Flanking Amino Acid:
IKVSGDGESLDEDSEFTLAA
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
80.5
34.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
83.7
0.76
0.8
76.8
36.8
Minor 5ss
44
-0.7
2.8
55.1
43.4
Minor BPS
52.2
0.15
2
76.75
40

Associated Gene:

Gene:
NAP1L4
Ensembl Gene ID:
ENSAPLG00000014701
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032862
35498829 - 35514589
15761
ENSAPLT00000015349
35498829 - 35520539
21711