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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35514519_35519330_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
35514519 - 35519330
Intron Length:
4812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTATGCCCA
5'SS Class:
major
3'SS Sequence:
GGAGGGAGAAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTGTCATAGGA
Flanking Amino Acid:
GEAIEDDDNV*
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.1
57.2
41.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
36.6
-0.7
1.6
20.8
35.4
Minor 5ss
46.7
-0.3
2.8
61.6
43
Minor BPS
45.4
-0.3
2.1
63.46
43.1

Associated Gene:

Gene:
NAP1L4
Ensembl Gene ID:
ENSAPLG00000014701
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015349
35498829 - 35520539
21711