Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35545316_35550122_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

35545316 - 35550122

Intron Length:

4807

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAAGGCTC

5'SS Class:

strong_major

3'SS Sequence:

CTGTCTCTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAT

U12 Branch Point Sequence:

TTGCCCTGATGT

Flanking Amino Acid:

LTKAVPSSDTGTMLGICASV

Intron Amino Acid Position:

416

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

68.2

Major BPS

66.4

0.41

1.1

56.9

40.5

Major PPT

0.52

0.8

65.7

Minor 5ss

35.8

-1.6

3.5

51.7

Minor BPS

48.4

-0

70.35

46.1

Associated Gene:

Gene:

SLC22A18

Ensembl Gene ID:

ENSAPLG00000014592

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026159

35545052 - 35606265

61214

ENSAPLT00000015226

35545128 - 35607054

61927