Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35600884_35601604_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

35600884 - 35601604

Intron Length:

721

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGTCA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTCCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTCCAA

U12 Branch Point Sequence:

GCTTCTTCCAAG

Flanking Amino Acid:

LPAVFMHGLPGAQKVITDLT

Intron Amino Acid Position:

188

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.94

0.8

78.4

31.8

Major BPS

55.8

0.14

1.3

68.1

Major PPT

0.83

0.7

81.4

30.6

Minor 5ss

-1.5

3.2

47.9

47.8

Minor BPS

43.9

-0.6

2.1

49.28

44.5

Associated Gene:

Gene:

SLC22A18

Ensembl Gene ID:

ENSAPLG00000014592

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026159

35545052 - 35606265

61214

ENSAPLT00000015226

35545128 - 35607054

61927