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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_356433_357841_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
356433 - 357841
Intron Length:
1409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTCTAAATA
Flanking Amino Acid:
FGKQVVEKVETEYARFENGR
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
81.3
32.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
31.8
-2.1
3.6
48.2
47.9
Minor BPS
65.5
0.48
1.6
74.21
38.4

Associated Gene:

Gene:
TEAD1
Ensembl Gene ID:
ENSAPLG00000016417
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017135
355120 - 508802
153683
ENSAPLT00000042611
355120 - 508802
153683
ENSAPLT00000040884
355120 - 508802
153683
ENSAPLT00000037311
355120 - 508802
153683