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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35652261_35754196_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35652261 - 35754196
Intron Length:
101936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
TATGTCTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
TGACACTAAACA
Flanking Amino Acid:
GARLNRVEDKVTQMDQKLNL
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
79.2
0.66
0.8
73.9
36.4
Minor 5ss
42.4
-0.8
3.1
59.1
45.6
Minor BPS
50.9
0.02
1.9
64.03
41.4

Associated Gene:

Gene:
KCNQ1
Ensembl Gene ID:
ENSAPLG00000014530
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015138
35652060 - 35991226
339167