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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35755145_35755798_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35755145 - 35755798
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGACAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TCTTTGTTTACA
Flanking Amino Acid:
LMVRIKELQRRLDQSIGKPS
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
69.6
36.5
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
88.7
0.87
0.8
83.2
31.9
Minor 5ss
37.4
-1.4
3
47.2
48.2
Minor BPS
51.2
0.03
2.3
70.34
42.1

Associated Gene:

Gene:
KCNQ1
Ensembl Gene ID:
ENSAPLG00000014530
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015138
35652060 - 35991226
339167