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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35755894_35763850_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35755894 - 35763850
Intron Length:
7957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTTACA
Flanking Amino Acid:
QYFVAKKKFQQARKPYDVRD
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.7
0.96
0.7
87.8
29.3
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
65.1
0.47
1.8
80.31
35

Associated Gene:

Gene:
KCNQ1
Ensembl Gene ID:
ENSAPLG00000014530
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015138
35652060 - 35991226
339167