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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_357983_369104_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
357983 - 369104
Intron Length:
11122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
CTTTTCCCAACA
Flanking Amino Acid:
QNAFFLVKFWADLNCNIQDD
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74
38.4
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
78.6
0.64
0.8
74.2
29.5
Minor 5ss
29.2
-2.4
2.5
25.1
36.7
Minor BPS
55.5
0.17
1.9
71.95
40.1

Associated Gene:

Gene:
TEAD1
Ensembl Gene ID:
ENSAPLG00000016417
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040884
355120 - 508802
153683
ENSAPLT00000037311
355120 - 508802
153683
ENSAPLT00000017135
355120 - 508802
153683
ENSAPLT00000042611
355120 - 508802
153683