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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3582129_3622978_F

Intron Information:

Intron Rank:
146182
Intron Class:
major
Intron Phase:
Intron Coordinates:
3582129 - 3622978
Intron Length:
40850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCTTTCTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
33.8
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
80
0.68
0.8
77.7
35.6
Minor 5ss
46.8
-0.3
3
64.4
47
Minor BPS
77
0.93
1.1
86.06
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028743
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041821
3530550 - 3623673
93124