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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35892672_35894965_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35892672 - 35894965
Intron Length:
2294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAAGT
5'SS Class:
major
3'SS Sequence:
ACTTTTGCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
ATCACATTAATT
Flanking Amino Acid:
QIPAAASLIQTAWRCYAAEN
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
66.6
44.8
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
69.9
0.45
0.9
62.3
39.2
Minor 5ss
39.7
-1.2
3.2
58.7
45.4
Minor BPS
62.6
0.47
1.6
76.47
40.1

Associated Gene:

Gene:
KCNQ1
Ensembl Gene ID:
ENSAPLG00000014530
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015138
35652060 - 35991226
339167