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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35947117_35990828_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35947117 - 35990828
Intron Length:
43712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTCTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTTTTTTACA
Flanking Amino Acid:
GWKCFVYHFTVFLIVLICLI
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
67.9
37.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
94.8
1.01
0.6
90.9
21.3
Minor 5ss
33.5
-1.9
2.7
39.1
38.9
Minor BPS
64.3
0.44
1.6
74.15
37.7

Associated Gene:

Gene:
KCNQ1
Ensembl Gene ID:
ENSAPLG00000014530
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015138
35652060 - 35991226
339167