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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36034919_36036461_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36034919 - 36036461
Intron Length:
1543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTCTTTTAACT
Flanking Amino Acid:
FLIYTNLIAFSEEKQSKKEP
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
86.8
0.83
0.8
80.7
31.5
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
75.5
0.88
1.1
85.79
33.8

Associated Gene:

Gene:
TRPM5
Ensembl Gene ID:
ENSAPLG00000014148
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030166
36016590 - 36056037
39448
ENSAPLT00000014798
36016590 - 36050096
33507