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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36048094_36049918_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36048094 - 36049918
Intron Length:
1825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTAT
5'SS Class:
major
3'SS Sequence:
CTGCTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGCAT
U12 Branch Point Sequence:
TATGACTGAAAT
Flanking Amino Acid:
NEERLKATSNNKYLQEPLKK
Intron Amino Acid Position:
1081

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
79.5
29.5
Major BPS
67.2
0.43
1.4
77.7
37.1
Major PPT
82.9
0.74
0.8
80.4
31.6
Minor 5ss
49.7
-0
2.5
66.5
39
Minor BPS
51.3
0.12
1.9
72.94
42.9

Associated Gene:

Gene:
TRPM5
Ensembl Gene ID:
ENSAPLG00000014148
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014798
36016590 - 36050096
33507