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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36050015_36050095_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
36050015 - 36050095
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
TTTGTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTCAGCA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
73.9
30.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.8
0.78
0.8
80.2
32
Minor 5ss
42.3
-0.8
2.8
54.2
38.3
Minor BPS
50.5
0.01
2
70.87
40.6

Associated Gene:

Gene:
TRPM5
Ensembl Gene ID:
ENSAPLG00000014148
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014798
36016590 - 36050096
33507