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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36054469_36055936_F

Intron Information:

Intron Rank:
23
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
36054469 - 36055936
Intron Length:
1468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ACAATCCTATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACAATC
Flanking Amino Acid:
LCNQPAPDYTRLMNASTEVP
Intron Amino Acid Position:
1136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.2
90.9
28.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
59.1
0.21
1
56.6
39
Minor 5ss
43
-0.8
2.9
59.7
38
Minor BPS
58.8
0.26
1.8
75.28
35.1

Associated Gene:

Gene:
TRPM5
Ensembl Gene ID:
ENSAPLG00000014148
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030166
36016590 - 36056037
39448