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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36075544_36078194_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36075544 - 36078194
Intron Length:
2651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGGGC
5'SS Class:
major
3'SS Sequence:
TTTGTCTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAG
U12 Branch Point Sequence:
CTTTCCCGATTT
Flanking Amino Acid:
IQESQCLLGTFFTCLVILFA
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
64.8
41.3
Major BPS
62.8
0.32
1.5
69.9
35.3
Major PPT
82
0.72
0.8
76.7
32.1
Minor 5ss
30.1
-2.3
3.5
41.6
45.3
Minor BPS
48.8
-0
2
73.51
43.5

Associated Gene:

Gene:
CD81
Ensembl Gene ID:
ENSAPLG00000023901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020965
36072062 - 36131204
59143
ENSAPLT00000019393
36072062 - 36131204
59143
ENSAPLT00000017453
36072062 - 36099125
27064
ENSAPLT00000025682
36072062 - 36132217
60156