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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36078293_36089050_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36078293 - 36089050
Intron Length:
10758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCTGCAGTAACG
Flanking Amino Acid:
DKQAPNTFYVGIYILIAVGA
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
72.7
0.56
1
75
30.1
Major PPT
82.6
0.73
0.7
76.6
25.4
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
47.1
-0.3
2.4
59.99
47.6

Associated Gene:

Gene:
CD81
Ensembl Gene ID:
ENSAPLG00000023901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020965
36072062 - 36131204
59143
ENSAPLT00000019393
36072062 - 36131204
59143
ENSAPLT00000017453
36072062 - 36099125
27064
ENSAPLT00000025682
36072062 - 36132217
60156