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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36089166_36099059_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36089166 - 36099059
Intron Length:
9894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
GCTTTCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
CTGTGGGTAACA
Flanking Amino Acid:
LLFVFNFIFWLAGGIILGVA
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
56.7
42.7
Major BPS
61.1
0.28
1
67
29.8
Major PPT
77.7
0.62
0.8
69.4
36.9
Minor 5ss
33.3
-1.9
3
35.1
41
Minor BPS
41.2
-0.6
2.8
58.14
47.7

Associated Gene:

Gene:
CD81
Ensembl Gene ID:
ENSAPLG00000023901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017453
36072062 - 36099125
27064