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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36107008_36108867_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36107008 - 36108867
Intron Length:
1860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACTGCG
5'SS Class:
major
3'SS Sequence:
TATTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTTATT
Flanking Amino Acid:
HAPGHHHLLHGLRDGSDFIP
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.2
61
44
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84
0.77
0.7
82.3
29.2
Minor 5ss
39
-1.2
3.1
51
45.4
Minor BPS
62.9
0.49
1.9
83.69
36.7

Associated Gene:

Gene:
CD81
Ensembl Gene ID:
ENSAPLG00000023901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025682
36072062 - 36132217
60156
ENSAPLT00000020965
36072062 - 36131204
59143
ENSAPLT00000019393
36072062 - 36131204
59143