About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36108952_36109960_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36108952 - 36109960
Intron Length:
1009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTAATGC
5'SS Class:
major
3'SS Sequence:
TCTCTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTGCAA
U12 Branch Point Sequence:
TGTGCTGCAAGG
Flanking Amino Acid:
PPVRDCVCSEGLPTRDPGLP
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1
58
35.8
Major BPS
44.3
-0.3
1.5
51.3
44.2
Major PPT
83.5
0.75
0.7
76.3
32.3
Minor 5ss
38.3
-1.3
3.1
50.4
46.2
Minor BPS
39.5
-0.9
2.4
47.55
45.9

Associated Gene:

Gene:
CD81
Ensembl Gene ID:
ENSAPLG00000023901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025682
36072062 - 36132217
60156
ENSAPLT00000020965
36072062 - 36131204
59143
ENSAPLT00000019393
36072062 - 36131204
59143