Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36111481_36123234_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36111481 - 36123234

Intron Length:

11754

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCTTC

5'SS Class:

strong_major

3'SS Sequence:

GCTTCTATCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

AGACCTTTACAT

Flanking Amino Acid:

ACWRYARSTEVEDSMMDVYD

Intron Amino Acid Position:

119

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.97

0.8

82.3

32.2

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

75.2

0.57

0.9

68.8

35.9

Minor 5ss

48.4

-0.1

2.8

67.4

Minor BPS

48.7

-0

1.7

63.04

40.5

Associated Gene:

Gene:

CD81

Ensembl Gene ID:

ENSAPLG00000023901

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025682

36072062 - 36132217

60156

ENSAPLT00000020965

36072062 - 36131204

59143