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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36111481_36127736_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36111481 - 36127736
Intron Length:
16256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGCGTATC
5'SS Class:
major
3'SS Sequence:
GCTTCTATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
AGACCTTTACAT
Flanking Amino Acid:
VRESQCLTATVEDSMMDVYD
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
72.8
38.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
75.2
0.57
0.9
68.8
35.9
Minor 5ss
34.3
-1.8
3.1
45.8
42.6
Minor BPS
48.7
-0
1.7
63.04
40.5

Associated Gene:

Gene:
CD81
Ensembl Gene ID:
ENSAPLG00000023901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019393
36072062 - 36131204
59143