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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36128872_36130190_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36128872 - 36130190
Intron Length:
1319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTAAAA
U12 Branch Point Sequence:
TTCCTCCAAACC
Flanking Amino Acid:
QLMATSLCIMLLGLSIATLS
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.6
41.3
Major BPS
58
0.2
1.2
65.3
38.6
Major PPT
85.5
0.8
0.7
80
25.3
Minor 5ss
38.9
-1.3
2.9
45.6
43.8
Minor BPS
48.2
-0.1
2
63.99
41.6

Associated Gene:

Gene:
CD81
Ensembl Gene ID:
ENSAPLG00000023901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025682
36072062 - 36132217
60156
ENSAPLT00000020965
36072062 - 36131204
59143
ENSAPLT00000019393
36072062 - 36131204
59143