Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36130497_36130747_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

36130497 - 36130747

Intron Length:

251

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TTTCCCCTCTAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

TTCCCCTCTAAG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.3

1.12

0.8

80.2

30.6

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

71.8

0.49

75.8

26.7

Minor 5ss

29.2

-2.4

3.8

39.9

46.1

Minor BPS

45.9

-0.4

54.83

45.5

Associated Gene:

Gene:

CD81

Ensembl Gene ID:

ENSAPLG00000023901

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025682

36072062 - 36132217

60156

ENSAPLT00000020965

36072062 - 36131204

59143

ENSAPLT00000019393

36072062 - 36131204

59143