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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36132947_36133081_F

Intron Information:

Intron Rank:
139039
Intron Class:
major
Intron Phase:
Intron Coordinates:
36132947 - 36133081
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCTGA
5'SS Class:
major
3'SS Sequence:
CTTTCCCACGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CCATTCTCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
65.9
42.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
70.9
0.47
0.8
66.6
28.5
Minor 5ss
42.8
-0.8
2.9
47.2
48.2
Minor BPS
54.5
0.12
1.6
58.52
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024862
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047083
36132238 - 36133449
1212