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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36153730_36153987_F

Intron Information:

Intron Rank:
137159
Intron Class:
major
Intron Phase:
Intron Coordinates:
36153730 - 36153987
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAAGATT
5'SS Class:
major
3'SS Sequence:
GCTTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TCAATTTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1
72.3
38.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
82.2
0.72
0.9
75.5
38.3
Minor 5ss
32.6
-2
3.5
48.8
47.2
Minor BPS
50.2
0
1.7
59.82
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023881
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045845
36153020 - 36154316
1297