Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36189549_36189690_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36189549 - 36189690

Intron Length:

142

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAAGAAAC

5'SS Class:

major

3'SS Sequence:

TCTTTCCCCACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCAT

U12 Branch Point Sequence:

TCTTTCCCCACA

Flanking Amino Acid:

EDVRTTKEDKFHWFPRKICE

Intron Amino Acid Position:

157

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.8

0.49

1.1

68.1

37.1

Major BPS

87.6

0.93

0.9

89.3

Major PPT

82.1

0.72

0.7

76.7

25.5

Minor 5ss

35.8

-1.6

44.8

42.9

Minor BPS

45.7

-0.3

2.2

63.62

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013071

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013660

36182201 - 36198065

15865

ENSAPLT00000047165

36182201 - 36198065

15865