Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36190057_36191818_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36190057 - 36191818

Intron Length:

1762

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTAAGTCTT

5'SS Class:

major

3'SS Sequence:

GCTTGCCTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAGTAAT

U12 Branch Point Sequence:

CTGTCAGTAATG

Flanking Amino Acid:

SIAEIAFHYKHGDPIPHVEY

Intron Amino Acid Position:

209

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

75.9

39.9

Major BPS

64.3

0.36

1.2

65.3

38.6

Major PPT

76.9

0.61

0.9

69.4

36.8

Minor 5ss

42.4

-0.8

3.1

39.9

Minor BPS

46.7

-0.3

2.3

55.85

45.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013071

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013660

36182201 - 36198065

15865