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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36190057_36192550_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36190057 - 36192550
Intron Length:
2494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TTTCATCCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCACCTTTCATC
Flanking Amino Acid:
SIAEIAFHYKQKEVYSTLKS
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.9
39.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
72.1
0.5
1
72.5
32.3
Minor 5ss
42.4
-0.8
3.1
65
39.9
Minor BPS
50.8
0.01
1.7
60.01
39.8

Associated Gene:

Gene:
TH
Ensembl Gene ID:
ENSAPLG00000013071
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047165
36182201 - 36198065
15865