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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3623119_3623445_F

Intron Information:

Intron Rank:
146183
Intron Class:
major
Intron Phase:
Intron Coordinates:
3623119 - 3623445
Intron Length:
327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TTAGGTTTAGAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
79.2
0.72
1
75
40
Major PPT
90.4
0.91
0.6
88.5
21
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
45.5
-0.2
2.1
65.64
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028743
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041821
3530550 - 3623673
93124