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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36242187_36248299_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36242187 - 36248299
Intron Length:
6113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TCTGCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TCTGTATTGACG
Flanking Amino Acid:
FVCGDRGFYFSRPVGRNNRR
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
80
0.68
0.8
73.3
31.6
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
49.9
-0.1
1.8
58.78
43.4

Associated Gene:

Gene:
IGF2
Ensembl Gene ID:
ENSAPLG00000028329
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032979
36236030 - 36249925
13896