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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36480779_36481042_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36480779 - 36481042
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTCGT
5'SS Class:
major
3'SS Sequence:
TTTTGTTGCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATAAT
U12 Branch Point Sequence:
TTCTCCATAATT
Flanking Amino Acid:
QKAHPGSQYSRMTKVDIKNY
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.2
65.3
46
Major BPS
62.9
0.32
1.2
63.9
38.4
Major PPT
75.1
0.56
0.9
69.4
41.7
Minor 5ss
47.6
-0.2
2.6
68.2
42.5
Minor BPS
74.3
0.84
1.6
88.85
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012955
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042751
36470745 - 36482051
11307