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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36483235_36485351_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36483235 - 36485351
Intron Length:
2117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTTTGTATTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCTTTCATT
Flanking Amino Acid:
LRNRIDQAQKHSKKAGAKGK
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.9
36.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
82.8
0.74
0.8
78.4
34.8
Minor 5ss
39.2
-1.2
2.7
53
37.4
Minor BPS
73.9
0.83
1.6
91.31
32.6

Associated Gene:

Gene:
TNNT3
Ensembl Gene ID:
ENSAPLG00000011980
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012535
36482836 - 36509281
26446
ENSAPLT00000035197
36481858 - 36504963
23106
ENSAPLT00000032722
36483186 - 36504210
21025
ENSAPLT00000026755
36481858 - 36504963
23106
ENSAPLT00000017855
36483186 - 36504210
21025