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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36485393_36488385_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36485393 - 36488385
Intron Length:
2993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTATCTCTAAAA
Flanking Amino Acid:
TEQIKRKKYEIVTLRNRIDQ
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.4
19.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
80.5
0.69
0.9
77.4
41.2
Minor 5ss
34.1
-1.8
2.8
39.9
46.1
Minor BPS
61.2
0.35
1.8
74.52
36.4

Associated Gene:

Gene:
TNNT3
Ensembl Gene ID:
ENSAPLG00000011980
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032722
36483186 - 36504210
21025
ENSAPLT00000017855
36483186 - 36504210
21025
ENSAPLT00000012535
36482836 - 36509281
26446