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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36488477_36489333_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
36488477 - 36489333
Intron Length:
857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACATGC
5'SS Class:
major
3'SS Sequence:
CACAAACACACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATGTGAT
U12 Branch Point Sequence:
TTTCTCCTATTG
Flanking Amino Acid:
NIDHLNEDKLRDKAKELWDW
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.2
66.9
40
Major BPS
72.4
0.56
1.2
63.1
44.4
Major PPT
52.2
0.05
1
43
36
Minor 5ss
43.8
-0.7
2.9
60
44.6
Minor BPS
48.2
-0.2
1.9
61.08
41.1

Associated Gene:

Gene:
TNNT3
Ensembl Gene ID:
ENSAPLG00000011980
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017207
36483186 - 36504210
21025
ENSAPLT00000032722
36483186 - 36504210
21025
ENSAPLT00000012535
36482836 - 36509281
26446
ENSAPLT00000026755
36481858 - 36504963
23106
ENSAPLT00000042675
36482836 - 36509281
26446
ENSAPLT00000025535
36482836 - 36504963
22128
ENSAPLT00000037771
36482836 - 36509281
26446
ENSAPLT00000017855
36483186 - 36504210
21025
ENSAPLT00000035197
36481858 - 36504963
23106