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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36489444_36489648_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36489444 - 36489648
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
CTGACATTAATT
Flanking Amino Acid:
GATYSSYLAKADQKRGKKQT
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
61.5
0.26
1.1
55.8
42.7
Minor 5ss
33.2
-1.9
3
43.7
43.6
Minor BPS
60.2
0.4
1.7
73.75
43.3

Associated Gene:

Gene:
TNNT3
Ensembl Gene ID:
ENSAPLG00000011980
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025535
36482836 - 36504963
22128
ENSAPLT00000037771
36482836 - 36509281
26446
ENSAPLT00000017855
36483186 - 36504210
21025
ENSAPLT00000035197
36481858 - 36504963
23106
ENSAPLT00000017207
36483186 - 36504210
21025
ENSAPLT00000032722
36483186 - 36504210
21025
ENSAPLT00000012535
36482836 - 36509281
26446
ENSAPLT00000026755
36481858 - 36504963
23106
ENSAPLT00000042675
36482836 - 36509281
26446