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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36489763_36489987_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36489763 - 36489987
Intron Length:
225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTGCACTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTAAC
U12 Branch Point Sequence:
GTGTGCTGCACT
Flanking Amino Acid:
KEKERQARLAEEKARREEED
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
80
33.6
Major BPS
49.6
-0
1.3
53.3
40.4
Major PPT
68.2
0.41
0.9
60.8
34.9
Minor 5ss
37.7
-1.4
3.3
53.4
43.8
Minor BPS
46.9
-0.1
2.3
69.43
47

Associated Gene:

Gene:
TNNT3
Ensembl Gene ID:
ENSAPLG00000011980
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025535
36482836 - 36504963
22128
ENSAPLT00000037771
36482836 - 36509281
26446
ENSAPLT00000017855
36483186 - 36504210
21025
ENSAPLT00000035197
36481858 - 36504963
23106
ENSAPLT00000017207
36483186 - 36504210
21025
ENSAPLT00000032722
36483186 - 36504210
21025
ENSAPLT00000012535
36482836 - 36509281
26446
ENSAPLT00000026755
36481858 - 36504963
23106
ENSAPLT00000042675
36482836 - 36509281
26446