Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36490229_36490393_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36490229 - 36490393

Intron Length:

165

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTGAGTCCT

5'SS Class:

major

3'SS Sequence:

TCTCTGTGCTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTAAAT

U12 Branch Point Sequence:

TTCTTCCCACCT

Flanking Amino Acid:

EELVALKERIFYTWEFQEKR

Intron Amino Acid Position:

122

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.1

66.2

Major BPS

57.4

0.18

1.1

64.9

37.3

Major PPT

73.6

0.53

0.9

72.1

37.9

Minor 5ss

-1.8

48.7

41.1

Minor BPS

47.3

-0.1

2.1

72.26

44.7

Associated Gene:

Gene:

TNNT3

Ensembl Gene ID:

ENSAPLG00000011980

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025535

36482836 - 36504963

22128