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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36490511_36491368_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36490511 - 36491368
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTAAA
U12 Branch Point Sequence:
CTTGCCTAAAGC
Flanking Amino Acid:
IPEGEKVDFDDIQKKRQNKD
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
55
0.12
1.2
57.8
37.4
Major PPT
77.8
0.63
0.8
69.7
36.7
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
50.7
0
2.1
65.55
46.5

Associated Gene:

Gene:
TNNT3
Ensembl Gene ID:
ENSAPLG00000011980
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017207
36483186 - 36504210
21025
ENSAPLT00000032722
36483186 - 36504210
21025
ENSAPLT00000012535
36482836 - 36509281
26446
ENSAPLT00000026755
36481858 - 36504963
23106
ENSAPLT00000042675
36482836 - 36509281
26446
ENSAPLT00000025535
36482836 - 36504963
22128
ENSAPLT00000037771
36482836 - 36509281
26446
ENSAPLT00000017855
36483186 - 36504210
21025
ENSAPLT00000035197
36481858 - 36504963
23106