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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36491415_36492169_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36491415 - 36492169
Intron Length:
755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGAAAAT
U12 Branch Point Sequence:
TTTTCCTTGTCT
Flanking Amino Acid:
APEEEEKPRIKLTAPKIPEG
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
48.6
-0
1.2
53.4
38.7
Major PPT
83.1
0.74
0.8
77.4
31.3
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
59.2
0.37
3.5
95.37
31.5

Associated Gene:

Gene:
TNNT3
Ensembl Gene ID:
ENSAPLG00000011980
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017207
36483186 - 36504210
21025
ENSAPLT00000032722
36483186 - 36504210
21025
ENSAPLT00000012535
36482836 - 36509281
26446
ENSAPLT00000026755
36481858 - 36504963
23106
ENSAPLT00000042675
36482836 - 36509281
26446
ENSAPLT00000025535
36482836 - 36504963
22128
ENSAPLT00000037771
36482836 - 36509281
26446
ENSAPLT00000017855
36483186 - 36504210
21025
ENSAPLT00000035197
36481858 - 36504963
23106