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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36492189_36497458_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36492189 - 36497458
Intron Length:
5270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCAAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCAAAT
U12 Branch Point Sequence:
TGCTTCCAAATA
Flanking Amino Acid:
VQEEEEAPEEEEKPRIKLTA
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.6
32.3
Major BPS
64.7
0.37
1.1
69.5
34.1
Major PPT
69.9
0.45
1
62.8
36.5
Minor 5ss
33.3
-1.9
3.5
48.8
47.4
Minor BPS
47.4
-0.2
1.9
59.86
40.6

Associated Gene:

Gene:
TNNT3
Ensembl Gene ID:
ENSAPLG00000011980
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017207
36483186 - 36504210
21025
ENSAPLT00000035197
36481858 - 36504963
23106
ENSAPLT00000012535
36482836 - 36509281
26446
ENSAPLT00000026755
36481858 - 36504963
23106
ENSAPLT00000025535
36482836 - 36504963
22128
ENSAPLT00000042675
36482836 - 36509281
26446
ENSAPLT00000017855
36483186 - 36504210
21025
ENSAPLT00000037771
36482836 - 36509281
26446