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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36492189_36497850_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36492189 - 36497850
Intron Length:
5662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCAAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCAAAT
U12 Branch Point Sequence:
TGCTTCCAAATA
Flanking Amino Acid:
EEVHEPVHEPEEKPRIKLTA
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.5
30.7
Major BPS
64.7
0.37
1.1
69.5
34.1
Major PPT
69.9
0.45
1
62.8
36.5
Minor 5ss
39.1
-1.2
3.1
51.5
45.7
Minor BPS
47.4
-0.2
1.9
59.86
40.6

Associated Gene:

Gene:
TNNT3
Ensembl Gene ID:
ENSAPLG00000011980
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032722
36483186 - 36504210
21025