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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36502349_36503248_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
36502349 - 36503248
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CCACCTGCCAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGCTCTGTGACT
Flanking Amino Acid:
AEVHEEAHEEAHAEEVHEPV
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
74
36.6
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
51.9
0.04
1
50.8
31.5
Minor 5ss
38.1
-1.3
3.1
48.2
47.9
Minor BPS
55.4
0.25
2.1
75.34
42

Associated Gene:

Gene:
TNNT3
Ensembl Gene ID:
ENSAPLG00000011980
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026755
36481858 - 36504963
23106
ENSAPLT00000025535
36482836 - 36504963
22128
ENSAPLT00000017855
36483186 - 36504210
21025
ENSAPLT00000035197
36481858 - 36504963
23106
ENSAPLT00000017207
36483186 - 36504210
21025
ENSAPLT00000032722
36483186 - 36504210
21025